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Citations

A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis). Rachel Young, Lucas Lefevre1, Stephen J. Bush, Akshay Joshi1, Salam Herojeet Singh, Santosh Kumar Jadhav, Velu Dhanikachalam, Zofia M. Lisowski, Daniela Iamartino, Kim M. Summers, John L. Williams, Alan L. Archibald, Suresh Gokhale, Satish Kumar, and David A. Hume. Frontiers in Genetics (2019)

A graph-based approach for the visualisation and analysis of bacterial pangenomes. Joshua D Harling-Lee, Jamie Gorzynski, Gonzalo Yebra, Tim Angus, J Ross Fitzgerald, Tom C Freeman. Research Square – Preprint (2022).

A novel strain of lumpy skin disease virus causes clinical disease in cattle in Hong Kong. John Flannery, Barbara Shih, Ismar R. Haga, Martin Ashby, Amanda Corla, Simon King, Graham Freimanis, Noemi Polo, Anne Ching‐nga Tse, Christopher J. Brackman, Jason Chan, Patrick Pun, Andrew D. Ferguson, Andy Law, Samantha Lycett, Carrie Batten, Philippa M. Beard. Transboundary and Emerging Diseases (2021).

A Systems-Level Analysis of Total-Body PET Data Reveals Complex Skeletal Metabolism Networks in vivo. Karla J. Suchacki, Carlos J. Alcaide-Corral, Samah Nimale, Mark G. Macaskill, Roland H. Stimson, Colin Farquharson, Tom C. Freeman, Adriana A. S. Tavares. Frontiers in Medicine (2021).

Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. Fotis A. Baltoumas, Sofia Zafeiropoulou, Evangelos Karatzas, Mikaela Koutrouli, Foteini Thanati, Kleanthi Voutsadaki, Maria Gkonta, Joana Hotova, Ioannis Kasionis, Pantelis Hatzis, Georgios A. Pavlopoulos. Biomolecules (2021).

Blockchain Analysis of the Bitcoin Market. Igor Makarov, Antoinette Schoar. SSRN Electronic Journal – Preprint (2021).

Bovine host genome acts on rumen microbiome function linked to methane emissions. Marina Martínez-Álvaro, Marc D. Auffret, Carol-Anne Duthie, Richard J. Dewhurst, Matthew A. Cleveland, Mick Watson & Rainer Roehe. Nature Communications (2022).

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken. Stephen J. Bush, Lucy Freem, Amanda J. MacCallum, Jenny O’Dell, Chunlei Wu, Cyrus Afrasiabi, Androniki Psifidi, Mark P. Stevens, Jacqueline Smith, Kim M. Summers & David A. Hume. BMC Genomics (2018).

Computational Analysis of SARS-CoV-2 and SARS-Like Coronavirus Diversity in Human, Bat and Pangolin Populations. Nicholas J Dimonaco, Mazdak Salavati, Barbara B Shih. Viruses (2020).

Infected deep vein thrombophlebitis in people who inject drugs: missed opportunities and potential for alternative antimicrobial approaches. Hugh McCaughan, Clark D. Russell, Dáire T. O’Shea. Infection (2021).

Inflammatory profiles across the spectrum of disease reveal a distinct role for GM-CSF in severe COVID-19. Ryan S Thwaites, et al., Science Immunology (2021).

Prophages in the infant gut are largely induced, and may be functionally relevant to their hosts. Tamsin A. Redgwell, Jonathan Thorsen, Marie-Agnes Petit, Ling Deng, Gisle A. Vestergaard, Jakob Russel, Hans Bisgaard, Dennis S. Nielsen, Søren Sørensen, Jakob Stokholm, Shiraz A. Shah. bioRxiv – Preprint (2021).

Realistic agent-based simulation of infection dynamics and percolation. Kai Nagel, Christian Rakow, Sebastian A. Müller. Physica A Statistical Mechanics and its Applications (2021).

SARS‐CoV‐2 neutralizing antibodies decline over one year and patients with severe COVID‐19 pneumonia display a unique cytokine profile. Vimvara Vacharathit, Sirawat Srichatrapimuk, Suwimon Manopwisedjaroen, Suppachok Kirdlarp, Chanya Srisaowakarn, Chavachol Setthaudom, Nanthicha Inrueangsri, Prapaporn Pisitkun, Mongkol Kunakorn, Suradej Hongeng, Somnuek Sungkanuparph, Arunee Thitithanyanont. International Journal of Infectious Diseases (2021).

The VRNetzer platform enables interactive network analysis in Virtual Reality. Sebastian Pirch, Felix Müller, Eugenia Iofinova, Julia Pazmandi, Christiane V. R. Hütter, Martin Chiettini, Celine Sin, Kaan Boztug, Iana Podkosova, Hannes Kaufmann, Jörg Menche. Nature Communications (2021).

Three Dimensions of Science: A Web Tool for 3D Visualization of Scientific Literature. Jakub Swacha. 2021 ACM/IEEE Joint Conference on Digital Libraries (JCDL) – Proceeding (2021).

Tissue Proteomic Analysis Identifies Mechanisms and Stages of Immunopathology in Fatal COVID-19. Clark D. Russell, Asta Valanciute, Naomi N. Gachanja, Jillian Stephen, Rebekah Penrice-Randal, Stuart D. Armstrong, Sara Clohisey, Bo Wang, Wael Al Qsous, William A. Wallace, Gabriel C. Oniscu, Jo Stevens, David J. Harrison, Kevin Dhaliwal, Julian A. Hiscox, J. Kenneth Baillie, Ahsan R. Akram, David A. Dorward, Christopher D. Lucas. American Journal of Respiratory Cell and Molecular Biology (2022).

Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Daniel E. Goszczynski, Michelle M. Halstead, Alma D. Islas-Trejo, Huaijun Zhou, Pablo J. Ross. Genome Research (2021).

Transcriptomic Analysis of Rat Macrophages. Clare Pridans, Katharine M. Irvine, Gemma M. Davis, Lucas Lefevre, Stephen J. Bush, David A. Hume. Frontiers in Immunology (2021).

Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle. Kathryn Bartley, Wan Chen, Richard I. Lloyd Mills, Francesca Nunn, Daniel R. G. Price, Stephane Rombauts, Yves Van de Peer, Lise Roy, Alasdair J. Nisbet, Stewart T. G. Burgess. BMC Genomics (2021).